Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0755929.2a with 3 members (protein tyrosine phosphatase receptor type)

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Anura /

Completeness score: 1.00

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

34.6%

This HOG has 8301 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0779447	Eumetazoa	709		50.5%	16
HOG:E0790558	Metazoa	605		48.9%	16
HOG:E0779964	Eumetazoa	489		49.7%	16
HOG:E0761318	Bilateria	289		8.7%	16
HOG:E0802256	Eukaryota	237		6.8%	16
HOG:E0761374	Bilateria	235		3.8%	16
HOG:E0752326	Vertebrata	212		44.8%	16
HOG:E0746779	Gnathostomata	190		56.8%	16
HOG:E0746995	Gnathostomata	182		19.8%	16
HOG:E0795702	Opisthokonta	155		15.5%	16
HOG:E0782499	Eumetazoa	115		4.3%	16
HOG:E0655316	Protostomia	96		19.8%	16
HOG:E0774777	Bilateria	91		48.4%	16
HOG:E0643019	Arthropoda	84		16.7%	16
HOG:E0762898	Bilateria	82		18.3%	16
HOG:E0630644	Endopterygota	76		10.5%	16
HOG:E0765614	Bilateria	70		7.1%	16
HOG:E0648958	Ecdysozoa	54		38.9%	16
HOG:E0760954	Deuterostomia	40		72.5%	16
HOG:E0617662	melanogaster group	29		27.6%	16
HOG:E0771010	Bilateria	22		22.7%	16
HOG:E0772672	Bilateria	22		18.2%	16
HOG:E0804805	Eukaryota	22		18.2%	16
HOG:E0617900	melanogaster group	21		23.8%	16
HOG:E0747633	Gnathostomata	19		42.1%	16

Showing 1 to 25 of 8300 rows rows per page